This has always been standard behaviour for me with InCD installed, goes away when I remove it.
It's possible that standby is the real issue for you. Since there's no real purpose for standby on a desktop system, suggest not using it. Powering down the processor is a risky thing to do, stability-wise. Just set your system to shut off the monitor and leave the rest running. Powering down the HD is debatable, whether it saves anything or not.
Current drives running here: ND-2500A, ND-3500A, ND-3520A,
LTR-52327S, SOHW-1633S, SOHR-52A8S